rs31802854 SNP Detail

Summary

• ID
  rs31802854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCTTA TTCCTCCACA
  GTCACCTTCC AGCTCAGCCG CTGTTTATTT AACCCAAACA CTCTGCCTTG TATGGAACCT
  TCCAGGATTA TGCTTCTTGG GCTGCTTACA TCAGCTTTGG TCCCAAGGGG ACCATTCTCT
  CTTGTGATTA AGTCAGTGTG TGTCCTCTGT CCCTCTGATG GTGGGATGAC GTTCATATCA
  R
  TATGTTCCAT GTTCCGTGTT ACTTAATTGC ACTTTTATTA ATGAAGTTGT ACAAATTAGT
  AACTGAAGTC CTAAAGGTGT AGATATTGAC AGCTAAACTT CTGCCCTGGT TTTTTAAAAT
  TCACTTCTGT CTTTTCTCTC ATACAGTGTT TCTTGGGCCC CATCCTCTCA AGTGTCCTTA
  GTCTGCCAAA CACACGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47090867	NES11245751	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31802854					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090867	NES11245751	PERLEGEN	MM_PANEL	f	SNP	A/G
ss137758485	ENSMUSSNP4861945	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766340 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	261 bp proximal
Rr263732	regulatory region 263732	348 bp proximal