rs31802863 SNP Detail

Summary

• ID
  rs31802863
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGGAGT TTGCAGATTT
  GATGGATATC CTTTTCAGAG GCAATAGTCC TGATTAGTCC TGCTGGACCA CCTCTGCGGC
  AGCTTCTAGA GCGCCACCAA CTGGCACAAC AGCCTTGGTG CACAGGGACC CTCTCCAGCC
  CTGGACAAGG AGACTGCACT CTCAGAAAGA TTCGATTCAG TCACAGTGGA CAGTGCCAGG
  M
  ACACATTTTA TGTCTTTCCA GGGGCCGAAC TTTCCCTTCT CCTTTTCCTT GATGAGAGCA
  TCAGCTCTCT AATCTTCTGA TGTTCCATTT CGTTCAGCAT CAGCCTCACC GAGATCTTCT
  TCCCCCGGCT TTCATCTCAG ATTAGTTTTT CCATCTTCTC TAGGAATGCT TCATCCTTTC
  TAATAAACTA GAGGATGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47090876	NES11245666	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	A	C	C
ss137758509	ENSMUSSNP5548476	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31802863					SNP	A	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090876	NES11245666	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766983 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	within coordinates
Rr263732	regulatory region 263732	within coordinates