rs31803468 SNP Detail

Summary

• ID
  rs31803468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131566219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG GTTTCCACAC AGAGCTCAGC
  Y
  TCGGAGCCCA ACCCATCCAC TTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45072201	mCV25112463	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T	C
ss51366984	NES14473841	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T				C	T		C
ss145480069	ENSMUSSNP5240452	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss319974769	CHEV_1_133535058	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31803468					SNP	C	C	T	C	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366984	NES14473841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131566219 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	819 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	84 bp downstream
Tssr8635	transcription start site region 8635	185 bp downstream
Tssr8636	transcription start site region 8636	143 bp downstream
Tssr8637	transcription start site region 8637	118 bp downstream
Tssr8638	transcription start site region 8638	77 bp downstream
Tssr8639	transcription start site region 8639	within coordinates
Tssr8640	transcription start site region 8640	4 bp upstream