rs31803819 SNP Detail

Summary

• ID
  rs31803819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53767576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAAAAT CTTTATGACT
  TTTCCATAAA TTCTCTGTAT GTTTTACATA ATCATAACTG CTGAGCACAA AATGTATAGG
  CTTATTTTTG ATCTGACCAA TGCTGAAAGA ACTCAGATGC TAATGTTTTC CATGTTACCT
  AATAGTCTCT AATATTATGT TAACAAAGGA AAATACTATG TTGGAGGCAT AGAGTAAGCT
  M
  ATTAACTTAT AGCACTGCAA TCTAAAGTAG CCTTTCTCTG GGCAATGCAT TTTATGAATG
  TTTACTAAAT AGTAGTATCT ACCAGATGCT ATTGTAAATT ATATGATAGA AACAAAGCAG
  TTTTCCTTTT TTAAAGGAAC TGGTGGTCTG CTAGAAAACA ACAGCTCTAT GCAATAATTG
  TCTAGTCTTT CAGAGTATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47090882	NES11245657	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	C	A	C	C	C
ss137758512	ENSMUSSNP2680815	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31803819					SNP	A	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090882	NES11245657	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53767576 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	576 bp distal
Rr263732	regulatory region 263732	440 bp distal