rs31803822 SNP Detail

Summary

• ID
  rs31803822
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53767600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAATTCT CTGTATGTTT
  TACATAATCA TAACTGCTGA GCACAAAATG TATAGGCTTA TTTTTGATCT GACCAATGCT
  GAAAGAACTC AGATGCTAAT GTTTTCCATG TTACCTAATA GTCTCTAATA TTATGTTAAC
  AAAGGAAAAT ACTATGTTGG AGGCATAGAG TAAGCTCATT AACTTATAGC ACTGCAATCT
  W
  AAGTAGCCTT TCTCTGGGCA ATGCATTTTA TGAATGTTTA CTAAATAGTA GTATCTACCA
  GATGCTATTG TAAATTATAT GATAGAAACA AAGCAGTTTT CCTTTTTTAA AGGAACTGGT
  GGTCTGCTAG AAAACAACAG CTCTATGCAA TAATTGTCTA GTCTTTCAGA GTATCACAGT
  GGCAAATACA GAGGACAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47090885	NES11245658	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	A	A	A	A	T	A	A	T	A
ss137758515	ENSMUSSNP6491089	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31803822					SNP	T	T	A	A	A	T	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090885	NES11245658	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53767600 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	600 bp distal
Rr263732	regulatory region 263732	464 bp distal