rs31804021 SNP Detail

Summary

• ID
  rs31804021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:90619007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCAGCTAC CAAGCCATTT CACAGATTTC CAGGTCTTTG
  GTTGGCATGC TGAGTCTACT TGCATTCTTA ATCACTTGCT GCTATGTTCG AGCTTCTTCC
  Y
  AGTACCTGTT GACAGCTCTT TCAACAAACG GCGGTAGTGA CCGAATAGTT CTTTCCCCTT
  GCCTTTATTG GTCCTTTGTT TTTGGTGGTG TAGTTTTCTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss49776799	NES12390153	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs31804021					SNP	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49776799	NES12390153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:90619007 () rs orientation: forward

Symbol	Name	Function Class
1700084M14Rik	RIKEN cDNA 1700084M14 gene	within coordinates