rs31804815 SNP Detail

Summary

• ID
  rs31804815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53767774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTAACT TATAGCACTG
  CAATCTAAAG TAGCCTTTCT CTGGGCAATG CATTTTATGA ATGTTTACTA AATAGTAGTA
  TCTACCAGAT GCTATTGTAA ATTATATGAT AGAAACAAAG CAGTTTTCCT TTTTTAAAGG
  AACTGGTGGT CTGCTAGAAA ACAACAGCTC TATGCAATAA TTGTCTAGTC TTTCAGAGTA
  Y
  CACAGTGGCA AATACAGAGG ACAGTGAAGG TCCAAATTAA GGTGGAGACT AAGAAAGTCT
  GTAGAGAACG GAACTCTTAG GCTCAGTTTT GATGGGTGGA TAAAAATGTC ACAAGAGCTA
  GAGATTTCTA AATATAAGAA AGAGACAAAG GTACAGAGGC ATGAAAGGAT CCACATGCTG
  AGAGCTGATG TGCAATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47090888	NES11245659	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	C	T	T	C	T
ss137758518	ENSMUSSNP3101865	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31804815					SNP	C	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090888	NES11245659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53767774 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	774 bp distal
Rr263732	regulatory region 263732	638 bp distal