rs31804818 SNP Detail

Summary

• ID
  rs31804818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53767858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATGCTA TTGTAAATTA
  TATGATAGAA ACAAAGCAGT TTTCCTTTTT TAAAGGAACT GGTGGTCTGC TAGAAAACAA
  CAGCTCTATG CAATAATTGT CTAGTCTTTC AGAGTATCAC AGTGGCAAAT ACAGAGGACA
  GTGAAGGTCC AAATTAAGGT GGAGACTAAG AAAGTCTGTA GAGAACGGAA CTCTTAGGCT
  Y
  AGTTTTGATG GGTGGATAAA AATGTCACAA GAGCTAGAGA TTTCTAAATA TAAGAAAGAG
  ACAAAGGTAC AGAGGCATGA AAGGATCCAC ATGCTGAGAG CTGATGTGCA ATTTGGGTAA
  TGTTGAGACT TTTATGGTGG TGGTAATGAA TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTCTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47090891	NES11245660	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	T	C	C
ss137758524	ENSMUSSNP2306135	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31804818					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090891	NES11245660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53767858 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	858 bp distal
Rr263732	regulatory region 263732	722 bp distal