rs31804821 SNP Detail

Summary

• ID
  rs31804821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53768144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACATGCT GAGAGCTGAT
  GTGCAATTTG GGTAATGTTG AGACTTTTAT GGTGGTGGTA ATGAATGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTCT GTGTGTCTGT GTGTCTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTCT GTGTGTGTGT GTTTTATAGG AAGTATTAAG AAAATCATTA
  R
  CAGAGCATAA GCTTGCGAGA ACTCATTTAG TATGCTAAGA TATTTGAAAT TTTTATTTAG
  GTGGTGATTT TTCCCTCTTC GGTTTAGAAC CATAATTACA TATAAAGGTC TTTGGTGATG
  AGAGATGGAA TGACTGACCA CTTTGGGGGA AAGAGAAATT AGTAAGGGCT TGAACCTCAA
  GGAGCACCAT TGCAAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47090894	NES11245611	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
ss137758533	ENSMUSSNP4090478	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31804821					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090894	NES11245611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53768144 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1144 bp distal
Rr263732	regulatory region 263732	1008 bp distal