rs31805374 SNP Detail

Summary

• ID
  rs31805374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37299653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTACCCaa ttaatttata atttttaatC
  CTGAATAGAT AActggggaa gtagctcagt tatataaccc tagcttatac aaggccctgg
  gttccattcc cagAAGAGAA AAAACAAAAT TAAACAGAAG AGATTATAGA AAAATTCAGG
  R
  TGACTGTCAA CATTAATATT AGTTATGTCT AATATTGTTT CTCTCAGATA CACACCACCG
  TCTGTTGTGT AGGCAGTTTA AGCCTCTTTG GTGCCCAAGT GACTGTCCCC TTCTCCGTCC
  TTAGGTTTCC TTGAGCAAGG CCTAATGGTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45072885	mCV24143441	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss148937686	ENSMUSSNP224589	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss319691087	CHEV_1_37317417	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31805374					SNP	G	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37299653 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	706 bp proximal
Gm69908	predicted gene, 69908	within coordinates
Rr409496	regulatory region 409496	1918 bp distal