rs31805757 SNP Detail

Summary

• ID
  rs31805757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53768450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTTTGG TGATGAGAGA
  TGGAATGACT GACCACTTTG GGGGAAAGAG AAATTAGTAA GGGCTTGAAC CTCAAGGAGC
  ACCATTGCAA AGATGGCATC GACTGGCGCG TTAGACAGCA GAGGGACAGA ACTGGGGGCT
  GGGTGGTGAA ACCAAGGATG GGAAGAGCAG TCTGTCGCCA GCACATCTGG ACAAAACACA
  Y
  GAGGAGACAG TGATAAAGAC AAATCTGAGT CACGTGGGAG GTTGGCAGAA TTAGACGATG
  ACGGTGAGAT GATTAGTTTA ACTGGGGAGA TAAAAAGAGC TTGACATTGC TAGACCCTGT
  CGGTCAGAAG GCTGTGATTA GGCTTTGAGA CTATGTGGAT TTAGAGAGTC AGGTGTGAAT
  GAGCGAGTGA TGTCTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47090900	NES11245613	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		T	T	C	T	C	T
ss137758545	ENSMUSSNP358378	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31805757					SNP	C	C	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090900	NES11245613	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53768450 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1450 bp distal
Rr263732	regulatory region 263732	1314 bp distal