rs31805880 SNP Detail

Summary

• ID
  rs31805880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35907501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCTGCC TTCACTAGAC
  CTTTTTGTTT AGTACTAGGG ATTGAATCCA AGATCTTCTG CATGCTAAGG CAAACACTCT
  ACTACATTCT CAGTTCTTAC AAATATTTTT TAAAAATCAG GTTTAGAAAT GTTCATTTGA
  CCTTAAAATT GTGGGTGTGT GTTTGTGTGT GTTTCAACCA CAGCCCTCAT GGGAGTGTGA
  R
  GATAACTTTG TAAAGTCTCT TCTTTTCACC TTTCCATGGG TCCTAGGAAT TGAACTTGAG
  TTGTCAGGTT TGCCTTTACC AACTGAGCCA TCTATCTATG TGATCCAAGT TTTTAATTAG
  ATTTTTCTTA GATTTGTGCA TTTCACTTTA CGAATGTTTT GCCTTTACAC ATACATGTAT
  GTGCTCATTG TACATGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49278070	NES12722441	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31805880					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278070	NES12722441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35907501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	1955 bp distal
Rr535948	regulatory region 535948	1662 bp distal
Tssr150562	transcription start site region 150562	643 bp downstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates