rs31805881 SNP Detail

Summary

• ID
  rs31805881
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTGGAACT TTTAACTATG GTGTAGACCA GGCTGGCCTC
  AACTCCATGA CCCACTTGCC ACTGCCTTTG AAGGGCTGAG ATTAAACCAT CAAGTTAATA
  S
  CTTTTAGAGT TTCTGTTAAT ATCTGTGCTA TACAGACTTC TTCAGAGAGG GAGATGACAC
  TGACTCAAAA CATACATTTA AATCTTAGAA TAACATTTGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49278071	NES12722439	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31805881					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278071	NES12722439	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	1437 bp distal
Rr393530	regulatory region 393530	1685 bp downstream
Rr535948	regulatory region 535948	1144 bp distal
Tssr150559	transcription start site region 150559	1976 bp downstream
Tssr150560	transcription start site region 150560	1799 bp downstream
Tssr150561	transcription start site region 150561	1765 bp downstream
Tssr150562	transcription start site region 150562	125 bp downstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates