rs31805882 SNP Detail

Summary

• ID
  rs31805882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTATTTG GCTCCTCAGA
  TGAGCGATAT TAACTTGTAT TAGTAAGTGG CTGGACCTGG GATAACCCAT AAGGACCGAT
  AGGGTAGGAA TACAAAAGAA TGGAGGTTGG AGCACAGTTC AGCAATCAAT TGGACCTCAT
  TTATTCTTTA TTCAAGACTT TGTGGAATTA ATTTCATTCC TTACTGTGAG TTAGCATCTT
  R
  CCAACTTTTG TTTTCTTTCA TTTCTTAGAA CCCAGAGGGT AGACTTTAGG TAGTAAATCT
  TTTTTTTTTA AGATTTATTT ATTATATGTA AATACACTGT TGATGTCTTC AGACACACCA
  GAAGGGGCAT CAGATCTCAT TACAGATGGC TGTGAGCCAC CATGTGGTTA CTGGGAATTG
  AACTCAGGGC CTTTGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49278073	NES12722544	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31805882					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278073	NES12722544	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	790 bp distal
Rr393530	regulatory region 393530	1038 bp downstream
Rr535947	regulatory region 535947	1715 bp distal
Rr535948	regulatory region 535948	497 bp distal
Tssr150551	transcription start site region 150551	1915 bp downstream
Tssr150552	transcription start site region 150552	1796 bp downstream
Tssr150553	transcription start site region 150553	1725 bp downstream
Tssr150554	transcription start site region 150554	1684 bp downstream
Tssr150555	transcription start site region 150555	1668 bp downstream
Tssr150556	transcription start site region 150556	1612 bp downstream
Tssr150557	transcription start site region 150557	1573 bp downstream
Tssr150558	transcription start site region 150558	1542 bp downstream
Tssr150559	transcription start site region 150559	1329 bp downstream
Tssr150560	transcription start site region 150560	1152 bp downstream
Tssr150561	transcription start site region 150561	1118 bp downstream
Tssr150562	transcription start site region 150562	518 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates