rs31806059 SNP Detail

Summary

• ID
  rs31806059
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93223729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTGAA GCAGCCACCA
  TGACTGGGAC ATGTGGTAGA GCAGAGCTAC TTGTCACAGT CCCAGAAAGC AAAAGAAGGG
  TCAGAAGGAA GAGCCTGGGA TCCTGCAATC TCTTTTTCCC AGATGACCTG CCACCAGGCT
  CCATCTTGGG AAGGTTCTCC TACCTCTAAG AGGTGGTGAA TGGGAGCCAG GGATTTAGCA
  K
  TGAGCCTGTG AAGGGCACTC AGAATCCAAC TTTACGCAGC AATATAGTAA TACAAATGAA
  AGATATAAAA CATGTGGTCC TAGTTCCATT TCTGTCGCTG TGGTAAAAGC AACTTACAGG
  AGAAAGGATT TATTTTAGCT CATAGTTCCA GGTTGCAGTC CATCGTAGCA GGCAATCTAA
  AACTGTTAAG AAATAAATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45781979	mCV23361338	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss46606875	NES10428813	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		T	T	T	T		T		T	T	T		T
ss148843896	ENSMUSSNP5981849	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T					G
ss321614313	CHEV_5_93504896	CHEVERUD	SCREENING_POP	f	SNP													T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31806059					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46606875	NES10428813	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93223729 () rs orientation: forward

Symbol	Name	Function Class
Gm22915	predicted gene, 22915	1874 bp downstream
Gm71590	predicted gene, 71590	1304 bp downstream