rs31806854 SNP Detail

Summary

• ID
  rs31806854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93225031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTATAGA ACTCAGGACC
  CCCTGCCTCA GTAATGCTTG CACTCAGAGT GGGATGGGTC TTCCCACTTT ATTTAACTTA
  ATTAAGACAA TCCCCCATAG ACCAACTCAG TGTAGATAAC TTCTCACTGA GACTCTTTCC
  AGGAGAGTCT AAGTTGTGTC AGGTTGATAA GTCAGCATAT AGCCACCACA CGTGGACAAT
  Y
  AAGAATTCAA ATGTTCATTT AATGGTAACA CAACTCAAAG CCATGATCAA CAACCAGAGA
  AGGAGACACG GTATGAGGGT AGGACTTCAG AGTCAAAGAG CACTGTTTCC TGTCACTCTC
  TACCACTTTC TTATTGATGG CCTGATGGTT CCTATCTGTG AAATGGAGCA GATCATAGCT
  CTCTAGGCAA CTTCCAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46606880	NES10428738	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C		C	C	C	T		C
ss148844006	ENSMUSSNP7018892	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321614321	CHEV_5_93506198	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31806854					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46606880	NES10428738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93225031 () rs orientation: forward

Symbol	Name	Function Class
Gm71590	predicted gene, 71590	2 bp downstream