rs31807117 SNP Detail

Summary

• ID
  rs31807117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60058978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT CAGGTTTCAA AGAGTTTAAC
  R
  AGACAGCACC ACCACTTGCC TGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39327598	mCV27552959	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss52559999	NES15632515	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	G		G	G	A		A	A	G	A
ss147991256	ENSMUSSNP4541334	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss324985300	CHEV_15_60018684	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31807117					SNP	A	A	G	G	A	G	G	G	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559999	NES15632515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60058978 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	239 bp proximal
Tssr4605	transcription start site region 4605	75 bp downstream
Tssr134460	transcription start site region 134460	232 bp upstream
Tssr134461	transcription start site region 134461	98 bp upstream
Tssr134462	transcription start site region 134462	within coordinates
Tssr134463	transcription start site region 134463	45 bp downstream
Tssr134464	transcription start site region 134464	139 bp downstream
Tssr134465	transcription start site region 134465	193 bp downstream
Tssr134466	transcription start site region 134466	206 bp downstream
Tssr134467	transcription start site region 134467	242 bp downstream
Tssr134468	transcription start site region 134468	269 bp downstream
Tssr134469	transcription start site region 134469	300 bp downstream