rs31808080 SNP Detail

Summary

• ID
  rs31808080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:168661746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTAAAC AAGCTTGGGT
  CTAGGCCATA GTGAATGACT CTGAAGAACA AATAAATGGA TTGAGGGCAG CTGGTGTGAT
  TAGGGGGACT CTAAAACTTC TCAGTGGGGA GCTGAGGCAG AGCTATGGAC TCCCAGGTGC
  TGGTGCCCTG CTGCCAAAAT CTCAGAGAAC TCAGCCAAGC TCACACATAT TGAACCACAC
  Y
  TCCAGCACTC CTGAAACCAC TAAATCATTA TTTTATCTGT TATTATTTAC TAATACTGCA
  AAAACTTAAT ATATATATTG GATTATCCTC AAACTGTGAG CACTTGTTTG GGAATATATA
  TATATTGTAT ATATATATTT TTTGTATATA TATATAAATT AGTGAGCTTA CCAGTTTAGC
  ACTGATAAAC TCAAACACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47091844	NES11153035	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31808080					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47091844	NES11153035	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:168661746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23060	CpG island 23060	849 bp proximal
Mid1	midline 1	within coordinates
Rr695287	regulatory region 695287	607 bp proximal
Rr695288	regulatory region 695288	925 bp proximal
Tssr162728	transcription start site region 162728	846 bp upstream
Tssr162729	transcription start site region 162729	1005 bp upstream