rs31808362 SNP Detail

Summary

• ID
  rs31808362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCCTTTC CTTCCCTCGC TTATTTCCCC
  ATTTCGGGGT ATTCTGCATG AGCTCTGTGG ACTCCTATTT GGTCCCTGTT GCTTCCATGA
  AGCTAAAAGA GGTAACTGGA GAGGAAGATA AGGAGCTGAA GGCAAGTGAG GGACAGGCTC
  Y
  ATTGAGCTTA GAGCGTTTCG TGGTGCAGCA TCGGGAGGGT CTGGGCCAGT ACACTGGTGA
  GGAGCCAGAC TCACAGGCGC CCAGATCCTG AGCCTCCCAG CCCACAGTTC TAAGAGGTCC
  CAAGGCATCC TTGGGCAGTG TCTCTACTTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45073118	mCV23265300	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss145481827	ENSMUSSNP3187402	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss319975143	CHEV_1_133641258	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31808362					SNP	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672419 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	2000 bp proximal
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	652 bp downstream
Tssr8661	transcription start site region 8661	486 bp downstream