rs31808871 SNP Detail

Summary

• ID
  rs31808871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128651881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACACTGAA TATAGCAACT TGTACGTTTT CAGAAAACTT
  TCCCTTATAC TGTGTTTATT TGCTGTGAAA TGTGTGAGTT GTATCTGTAA GAGATGAATG
  R
  CTATATCATG TGAAGCCAAC TTTACTGAGA AGAAAGAAAA CATAAATCTT CAAAGTGCAG
  GTGTGGCTCA GAGCCAGATT GTCTGCTTAC ACTCAGAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48091131	NES11860421	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	A	A		A	A	A	G		A
ss133644085	ENSMUSSNP171121	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss321946002	CHEV_6_128624936	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31808871					SNP	G	G	G	G	G	A	G	G	G	A	A	G	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48091131	NES11860421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128651881 () rs orientation: forward

Symbol	Name	Function Class
Clec2h	C-type lectin domain family 2, member h	within coordinates
D6Mit257	DNA segment, Chr 6, Massachusetts Institute of Technology 257	1493 bp distal
Tssr59073	transcription start site region 59073	905 bp downstream
Tssr59074	transcription start site region 59074	157 bp downstream
Tssr59075	transcription start site region 59075	1701 bp upstream