rs31809045 SNP Detail

Summary

• ID
  rs31809045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35872834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACATCAA GAAATCCACA
  GCTATGCTTC TGGGGTTCTC CTGTCCTTCA GGGCCTAAGG TCCTGACTAG TCATCCATCT
  CCTTGGGTCT CCCAGCCCAG CTAGTCCCAT GGGCTACTCT TGGATACACC TCAAGGAGAC
  GCCCTGGGCA CATAGCATCC TACAGCACCT GTCTAGGAGA GGTTCATAGT AAACAGAGCG
  Y
  GTACATGTGA GCCCCACTGA GCTCACTGGT GTGAGAAAGA AGGAAGAAAC TGATCCAAGA
  CCTAGACCTT AGAGTGTTCT GCCAGCCCAG GGTTTCTCCC ACCACGAAGT ACCAGGAGAA
  TACTGCCCCA TTTCTAATCC TACCTTCTGC TTCCTAGACC GGTGTTCCTG GAGCAGAAGA
  GACAATGAAG AGCCTTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49278096	NES12723896	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31809045					SNP	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278096	NES12723896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35872834 () rs orientation: forward

Symbol	Name	Function Class
Sting1	stimulator of interferon response cGAMP interactor 1	within coordinates
Tssr150550	transcription start site region 150550	892 bp upstream
Tssr152909	transcription start site region 152909	214 bp downstream
Tssr152910	transcription start site region 152910	243 bp downstream
Tssr152911	transcription start site region 152911	286 bp downstream
Tssr152912	transcription start site region 152912	325 bp downstream
Tssr152913	transcription start site region 152913	423 bp downstream
Tssr152914	transcription start site region 152914	610 bp downstream
Tssr152915	transcription start site region 152915	658 bp downstream
Tssr152916	transcription start site region 152916	718 bp downstream