rs31809050 SNP Detail

Summary

• ID
  rs31809050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35872159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCAAGC CTTCATAGCT
  CCACACCCAG GTCTCCAACC TTTAAATTAG TCTGAGTCTC AGCACTGAGC TCAGGCACAC
  CAGCACTAGC CATAGTCCCC TCTTCCCACA CCACCCACCT CTTCTGCTTC ATACCTGAAG
  GCCCAGGAGC ATGCTTAGGG ACTTATAGAG GACCAGAAGG CCAAACATCC AACTGAGGTA
  Y
  ATGTCAGCAG TGTTTTGGAG GAAATAGAAA TAAGACGATA GTAGAATCAT AGCCATACAG
  TGGATGGGGC ATCCCAGGCA GGCGCGCACA GCCTTCCAGT AGCTGCCCTG GTACCTGCAG
  GGGACAGCCT AGCCTCAGAT CCCAGCCCAA CTCAGCTGAT GATGTTCAGG GAAGGCCAAG
  GTTAGGAGTC AAGGGTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49278101	NES12723891	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31809050					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278101	NES12723891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35872159 () rs orientation: forward

Symbol	Name	Function Class
Sting1	stimulator of interferon response cGAMP interactor 1	within coordinates
Tssr150550	transcription start site region 150550	1567 bp upstream
Tssr152909	transcription start site region 152909	889 bp downstream
Tssr152910	transcription start site region 152910	918 bp downstream
Tssr152911	transcription start site region 152911	961 bp downstream
Tssr152912	transcription start site region 152912	1000 bp downstream
Tssr152913	transcription start site region 152913	1098 bp downstream
Tssr152914	transcription start site region 152914	1285 bp downstream
Tssr152915	transcription start site region 152915	1333 bp downstream
Tssr152916	transcription start site region 152916	1393 bp downstream