rs31809159 SNP Detail

Summary

• ID
  rs31809159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:168662502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCTGAAA TCATTCTTCA
  CCTTTAAAAT GCTTTAATGC TTTTAAGGGG CTCTTAAAGT GCAAGGGTTT AAGGCCCGGA
  GCTAGTTAAG CTTTGAGCAG ATGCAGTCTG TTAGACAAGA ATAGAACTCA TCCTTTACTT
  TGGGGAGCTC TGACACAACA TCCAGCTGCT TCCAGTCATT TGACTCCTGA AAGCTGCCCT
  R
  ATCCTGGTAA AGGCAGCCTC TCCTGCACCC AGGTCCACCC ACTGCTCCTG ATTGGCGAGG
  CTCTCCGCGA CCGGAGCCCG CCGCCTACGA CGTCCCTGTG AACTGATTTG AAATAAGAGC
  CAGGCGGTCC TCGCTAGCCT GCGCCCGACT TTTCATAGGC TGGAAAAGGA AAGGTTGAGA
  AACTTGACAT TGTCTTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47091856	NES11153042	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31809159					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47091856	NES11153042	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:168662502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23060	CpG island 23060	93 bp proximal
Mid1	midline 1	within coordinates
Rr695287	regulatory region 695287	within coordinates
Rr695288	regulatory region 695288	169 bp proximal
Tssr162728	transcription start site region 162728	90 bp upstream
Tssr162729	transcription start site region 162729	249 bp upstream