rs31809576 SNP Detail

Summary

• ID
  rs31809576
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35016876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACCTAG TCATTAAGTG
  AAACAGACCG GAAACGCCAC AGAGCCTTGC TTCATCTTAC CTTCACCCCT GTATTTCTGT
  ATTTCACGAG CAACTCCAGT CAACACCGGT CAAGTCTGCT CCATGCAAAA CCTACTCAAC
  AGCTGTTGCT GCTAACTCTC CAGTCCACAC AACCACAGTC TCCCTGCTTC ATTCCTGCCC
  M
  CCCCCCAAGG AAACTACTCT CAAAATTAAA GCAAACATAA TGTTAAAACA TGCATCCTGC
  CAGGCATGGC ACTACACACC TTTAACACCA GCACCTGAGA GGCAGAGGCT GCTAAAATAC
  TGTGAGTCCA GCCAAGTGGA GCTAGCAAGG CCCTGTTCCC CCCCCCCCAA AAAAAAAGTA
  AAAGGGAAGA AATGCATTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss46070976	mCV22649668	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs31809576					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35016876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	616 bp proximal
Gpatch1	G patch domain containing 1	within coordinates
Tssr72030	transcription start site region 72030	957 bp downstream