rs31809689 SNP Detail

Summary

• ID
  rs31809689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128652021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTATAC TGTGTTTATT
  TGCTGTGAAA TGTGTGAGTT GTATCTGTAA GAGATGAATG ACTATATCAT GTGAAGCCAA
  CTTTACTGAG AAGAAAGAAA ACATAAATCT TCAAAGTGCA GGTGTGGCTC AGAGCCAGAT
  TGTCTGCTTA CACTCAGAGC CATCACCAGC AACACCACCA CATCACAAAC CTAAGTCCTT
  Y
  GGATATGCTC CCATTTATTG GCCATGATTT TCAAGGCATT TACTTAATTC AATTTCTCTC
  AAAACCTTTC ACATGGTGAT GATATCTAGG GGAGTTATTG TCTGCTCCAT CACCAATGGA
  AAACTTTTCT TTGCTGGTGT CAGAACTATA GGTGGGTGTT GGGGGCTCCA AAGCCCAGCA
  AGCCAGTGCA GAACTGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48091139	NES11860425	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31809689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48091139	NES11860425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128652021 () rs orientation: forward

Symbol	Name	Function Class
Clec2h	C-type lectin domain family 2, member h	within coordinates
D6Mit257	DNA segment, Chr 6, Massachusetts Institute of Technology 257	1633 bp distal
Tssr59073	transcription start site region 59073	1045 bp downstream
Tssr59074	transcription start site region 59074	297 bp downstream
Tssr59075	transcription start site region 59075	1561 bp upstream