rs31810469 SNP Detail

Summary

• ID
  rs31810469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128652786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCAGTAAC TATTGATTGT TTATTTATTT ATTTATTTAT
  TTATTTATTT TGATTTAGGG TTCTCACGAG AGGAGGAGGA GAATGTGGCT TCCTGAGTGA
  Y
  AATGGGATCA GCAGTGGCAG GAGCTACACA CATAGGAAGT GGATTTGTAG CAAGTTTGTC
  AGTAGTTGTA AATCCAGAGT AGGAAGTGTA CCAAGGCATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48091149	NES11860430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31810469					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48091149	NES11860430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128652786 () rs orientation: forward

Symbol	Name	Function Class
Clec2h	C-type lectin domain family 2, member h	within coordinates
Tssr59073	transcription start site region 59073	1810 bp downstream
Tssr59074	transcription start site region 59074	1062 bp downstream
Tssr59075	transcription start site region 59075	796 bp upstream