rs31811140 SNP Detail

Summary

• ID
  rs31811140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:168664072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAATGC TAGTTACTCT
  TGCCAGAGCG GAGTAACTCC GGGTGGGAAA CTGAGCATCT GTTTTGTCAC CGGAAAACCT
  CTTCTCTTTT TTCTTCCAGT TGAGTTGGGT GTGCCCCACC CCAAAGTGTT CACTTTAGGC
  GAAAGTAAAC CTTCCCATGA GTGGTTGGGC CAAGGGGTTT ACGACTTTCC GTTTCACTGC
  Y
  GCAGAGGTAA AGCAGAGGCC CTGCATGAAA GGTCAGGAGC AAAGGCCCTC ACATTTCTTA
  TTCGCTAACT TGCTCTTCTG GACGAGCTTG GGAAATTGCA GGAGTACAGA AAAAAGCACA
  TGAAAGACTG TGTGTGTGCT TTCAGCAAAT TGCATCTGCC TAGCTGGAGA GTGGTGCAGA
  GGCTGGCTTT CTCGAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47091880	NES11153050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31811140					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47091880	NES11153050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:168664072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23060	CpG island 23060	1215 bp distal
Mid1	midline 1	within coordinates
Tssr162728	transcription start site region 162728	1420 bp downstream
Tssr162729	transcription start site region 162729	1302 bp downstream