rs31811826 SNP Detail

Summary

• ID
  rs31811826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93320798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACT TAAAAAAACA
  TTGTCCAGCC AGCCCCTATC TGACCCCAGC CAAGTTTTGT GTTATCTTTT ACCTCCCCAT
  CGTAAGAAGA AAGCAGTGGC CTTTCATAAA CTAAATTAGG CTTCGTTAGA CAAATAAGGA
  CATTGGCTTC ACTGGGGTGT AGACCAGGCT GGAGAGCAGC CACAGCCATC TTCACTGGTG
  R
  AGGGGATAGC TCCAACACAG ACATCGGCTT TGCTTCCATT TTTCTAGCTA GCTGTGGAGC
  AGCAGGGACT AATGGCATGC TGACTAACCG ACGCTGCGTT TGCTTCTTCA CCGGGCACCA
  CGTAAGAGCT TGAGCACTGG TGTCCTCTGC TTGTTCCGGC CACTGCTTGT GTGAGCTTTA
  TTTTGTGTGT GTGTATGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46607519	NES10423988	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31811826					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607519	NES10423988	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93320798 () rs orientation: forward

Symbol	Name	Function Class
Rr130579	regulatory region 130579	within coordinates
Septin11	septin 11	within coordinates
Tssr47366	transcription start site region 47366	1553 bp downstream
Tssr47367	transcription start site region 47367	455 bp downstream
Tssr47368	transcription start site region 47368	161 bp downstream
Tssr47369	transcription start site region 47369	124 bp downstream
Tssr47370	transcription start site region 47370	within coordinates
Tssr47371	transcription start site region 47371	55 bp upstream
Tssr47372	transcription start site region 47372	88 bp upstream
Tssr47373	transcription start site region 47373	123 bp upstream
Tssr47374	transcription start site region 47374	645 bp upstream
Tssr47375	transcription start site region 47375	738 bp upstream