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rs31811830 SNP Detail
Summary
  • ID
    rs31811830
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:93321500 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
               ATGGGGCAGA TGAGGTCTTC TTTTAGAAGG TGTCCTGGAT AGTCTGAGTA
    R
    TCTTTTTTTT TTTCTTTTTC TTTTTTTTTT TCTTTTTAAA GCTAAATACT           
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46607523 NES10423992 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31811830 SNP A A A A A A G A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46607523 NES10423992 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:93321500 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr114907 regulatory region 114907 1501 bp proximal
Rr130579 regulatory region 130579 500 bp distal
Septin11 septin 11 within coordinates
Tssr47367 transcription start site region 47367 1157 bp downstream
Tssr47368 transcription start site region 47368 863 bp downstream
Tssr47369 transcription start site region 47369 826 bp downstream
Tssr47370 transcription start site region 47370 691 bp downstream
Tssr47371 transcription start site region 47371 622 bp downstream
Tssr47372 transcription start site region 47372 594 bp downstream
Tssr47373 transcription start site region 47373 537 bp downstream
Tssr47374 transcription start site region 47374 8 bp downstream
Tssr47375 transcription start site region 47375 36 bp upstream
Tssr47376 transcription start site region 47376 1711 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory