ATGGGGCAGA TGAGGTCTTC TTTTAGAAGG TGTCCTGGAT AGTCTGAGTA R TCTTTTTTTT TTTCTTTTTC TTTTTTTTTT TCTTTTTAAA GCTAAATACT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46607523 | NES10423992 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | G | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs31811830 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46607523 | NES10423992 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr5:93321500 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr114907 | regulatory region 114907 | 1501 bp proximal | ||||||
Rr130579 | regulatory region 130579 | 500 bp distal | ||||||
Septin11 | septin 11 | within coordinates | ||||||
Tssr47367 | transcription start site region 47367 | 1157 bp downstream | ||||||
Tssr47368 | transcription start site region 47368 | 863 bp downstream | ||||||
Tssr47369 | transcription start site region 47369 | 826 bp downstream | ||||||
Tssr47370 | transcription start site region 47370 | 691 bp downstream | ||||||
Tssr47371 | transcription start site region 47371 | 622 bp downstream | ||||||
Tssr47372 | transcription start site region 47372 | 594 bp downstream | ||||||
Tssr47373 | transcription start site region 47373 | 537 bp downstream | ||||||
Tssr47374 | transcription start site region 47374 | 8 bp downstream | ||||||
Tssr47375 | transcription start site region 47375 | 36 bp upstream | ||||||
Tssr47376 | transcription start site region 47376 | 1711 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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