rs31811831 SNP Detail

Summary

• ID
  rs31811831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93321571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT GGCCACATTT CTATTTTACC
  Y
  GACAGTTTAT GCTTCCTCTT GATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45746031	mCV22947445	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss46607524	NES10423994	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T		C	T	T	C		T	T	T	C		T
ss148845516	ENSMUSSNP533551	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321614733	CHEV_5_93602738	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31811831					SNP	C	C	T	T	T	T	C	C	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607524	NES10423994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93321571 () rs orientation: forward

Symbol	Name	Function Class
Rr114907	regulatory region 114907	1430 bp proximal
Rr130579	regulatory region 130579	571 bp distal
Septin11	septin 11	within coordinates
Tssr47367	transcription start site region 47367	1228 bp downstream
Tssr47368	transcription start site region 47368	934 bp downstream
Tssr47369	transcription start site region 47369	897 bp downstream
Tssr47370	transcription start site region 47370	762 bp downstream
Tssr47371	transcription start site region 47371	693 bp downstream
Tssr47372	transcription start site region 47372	665 bp downstream
Tssr47373	transcription start site region 47373	608 bp downstream
Tssr47374	transcription start site region 47374	79 bp downstream
Tssr47375	transcription start site region 47375	31 bp downstream
Tssr47376	transcription start site region 47376	1640 bp upstream