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rs31811833 SNP Detail
Summary
  • ID
    rs31811833
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:93321823 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
               GCTCCCTGAC ATTCCGGATC TCAGGCTAGT GGCTTCTCCT TTATGCTCAG
    Y
    GCACAATGGC CACTTCTTTT TAGTTTTTGG TTGGACAGCT TTGGCCTCTC           
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46607526 NES10423998 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31811833 SNP T T T T T T C T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46607526 NES10423998 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:93321823 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr114907 regulatory region 114907 1178 bp proximal
Rr130579 regulatory region 130579 823 bp distal
Septin11 septin 11 within coordinates
Tssr47367 transcription start site region 47367 1480 bp downstream
Tssr47368 transcription start site region 47368 1186 bp downstream
Tssr47369 transcription start site region 47369 1149 bp downstream
Tssr47370 transcription start site region 47370 1014 bp downstream
Tssr47371 transcription start site region 47371 945 bp downstream
Tssr47372 transcription start site region 47372 917 bp downstream
Tssr47373 transcription start site region 47373 860 bp downstream
Tssr47374 transcription start site region 47374 331 bp downstream
Tssr47375 transcription start site region 47375 283 bp downstream
Tssr47376 transcription start site region 47376 1388 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory