rs31811914 SNP Detail

Summary

• ID
  rs31811914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGAACTA AGATTGTTTG
  CTTGTTTTTC TGTTTTCTGT AACCCAGGAG GTCGTGAAGC CCTTTGAGGG CTTGGAGTGG
  GCAGAGAGCC TTGGGTTACC GTGTGTGCAC CTCCCTCGGG TGCTCTGGAA GGTGACATGT
  GGAGGCCCAG ACAGGACTTT GGAGTTCTGG TCAGCCTGTC TGTCTGGGTC TGTGTCAGTG
  R
  ACCTGTCTTT CTAGAAACAG ACACGCATGA TGGCGCTTGG AGAATTGCTG GGCTCCTTCC
  TGGAGTTTGG TCCAGAAGCC TCCTTGCAGG TTGCTCTTTT GGAATCAAAA GGCCCGAGAG
  TTAGGGAGAG CAAGAACTCA GGACCCAGAA ACAGACAGTC AGTCTTACGC AGAACAGTTG
  GGGCATGCAA GGCCCAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J
ss46072095	mCV22696587	ABI	CRAMUS_MOUSE	f	SNP		G	A				A
ss61003432	NES16114215	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A
ss149135478	ENSMUSSNP2718916	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J
rs31811914					SNP	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003432	NES16114215	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110012 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	1109 bp downstream
Cpgi19060	CpG island 19060	1158 bp distal
Cpgi19061	CpG island 19061	454 bp distal
Ftl1	ferritin light polypeptide 1	704 bp upstream
Gm10252	predicted gene 10252	288 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	421 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	214 bp distal
Rr646451	regulatory region 646451	479 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	432 bp proximal
Rr646454	regulatory region 646454	865 bp proximal
Tssr66541	transcription start site region 66541	900 bp downstream
Tssr66542	transcription start site region 66542	476 bp upstream
Tssr72395	transcription start site region 72395	1163 bp upstream
Tssr72396	transcription start site region 72396	1131 bp upstream
Tssr72397	transcription start site region 72397	857 bp upstream
Tssr72398	transcription start site region 72398	707 bp upstream
Tssr72399	transcription start site region 72399	334 bp downstream
Tssr72400	transcription start site region 72400	372 bp downstream