rs31812664 SNP Detail

Summary

• ID
  rs31812664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93321827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTACCA CTGTTGTGTA
  TGGCCTCCTG GAGGTCATGT AGAGGGCCTT TGATTGTGAC AGTGGCAAAA AGCTGGGGAA
  AGATTCCCAC TGTCCACGGG ACAAAAATCC TGAAAATGAT GTCTCTGCCA TGCTGCCTTT
  CTGCTTGCTC CCTGACATTC CGGATCTCAG GCTAGTGGCT TCTCCTTTAT GCTCAGTGCA
  Y
  AATGGCCACT TCTTTTTAGT TTTTGGTTGG ACAGCTTTGG CCTCTCTGCA CGGTGAGCAT
  CTTCTGCTCC TTCAGGACTG TGGTCCCCTG TAATTGTCAT CTGTGCTGTG GGAGGACGAC
  TGAGTACTTG GTCAGCAAGT ACTCGGGTAG CAGTTGAGAA CTGTTTTCTC AGCTTGGGCT
  CTGTATGAAT CGATCCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46607527	NES10424001	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31812664					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607527	NES10424001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93321827 () rs orientation: forward

Symbol	Name	Function Class
Rr114907	regulatory region 114907	1174 bp proximal
Rr130579	regulatory region 130579	827 bp distal
Septin11	septin 11	within coordinates
Tssr47367	transcription start site region 47367	1484 bp downstream
Tssr47368	transcription start site region 47368	1190 bp downstream
Tssr47369	transcription start site region 47369	1153 bp downstream
Tssr47370	transcription start site region 47370	1018 bp downstream
Tssr47371	transcription start site region 47371	949 bp downstream
Tssr47372	transcription start site region 47372	921 bp downstream
Tssr47373	transcription start site region 47373	864 bp downstream
Tssr47374	transcription start site region 47374	335 bp downstream
Tssr47375	transcription start site region 47375	287 bp downstream
Tssr47376	transcription start site region 47376	1384 bp upstream