rs31813380 SNP Detail

Summary

• ID
  rs31813380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35254799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGAAG GAGGCAGGAA
  GTCTTTCTGG AGTCTAAGCT TCCGACAGTA AGCACAATGA CACGTGAGGC AATTGATTAC
  AATCAAATTG CTGTTTTGGG CAACTTGAGC TTTCTTCAAC TTTGTCCCCT TTCTTTCCTT
  CTACCCAGAT CTAGTCAGTG ACAGAATCCG CTCTAGTGTT TTGTTTACAT GTCTTTCTTT
  R
  CTTCCACTCC ACTTTTAGAC TTGACTTTTC TTTTTTCTTT TTGGTGCTGT GGACTACTAA
  GTAGTATCTG AGTAAGCTGT TTAGTTGTTT GTTTGGTTTA TTATTTATTT AGTAAAGGGT
  CTGGAGTGAA TTTAGTGATC TTCCTGCCTT AGTCTCCCTA ATGCTGGGAT TAATTGTGTA
  CCACCTCACT TTACTTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49279546	NES12739452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31813380					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49279546	NES12739452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35254799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	1987 bp distal
Ctnna1	catenin alpha 1	within coordinates
Tssr150513	transcription start site region 150513	1928 bp downstream
Tssr150514	transcription start site region 150514	1906 bp downstream
Tssr150515	transcription start site region 150515	1510 bp downstream