rs31814185 SNP Detail

Summary

• ID
  rs31814185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35254350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGATTTTA TTCTAAAGCT
  GTATGATGCC ATTGTAGGGG TTTTCATGAT CTGAGCAGCA TTTTATTCAT TGCTGATGCT
  TAGAGAAAAC TTGAATTGGT GTGTGTGTAA AGCATGGAGT TGAGTGGGGA AGGTCATGTG
  GGTAAAGGCG ATCTGGATCA GTGGAAAGGA TCCAACTAAA GATTGGGTTA GGGTGGCACC
  Y
  AGGCATCTGG GTAAAGCTTC GGAAGTGTTG GACTCTTGGT CATATCTCAA GATCCAGCAT
  TTTCATTCCT GGTAGCAAAT TTTGTGTCAG TTTTCTTAGT AACTTATGTT TGTGTTGTAT
  TGATATCCCT GTTTGCTGTC CTTGTTGGAA AGTATAACCT CATGTAAACC TCTTCAAGGC
  AGGGCTCATG CCCTACCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49279551	NES12739447	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31814185					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49279551	NES12739447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35254350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	1538 bp distal
Ctnna1	catenin alpha 1	within coordinates
Tssr150512	transcription start site region 150512	1868 bp downstream
Tssr150513	transcription start site region 150513	1479 bp downstream
Tssr150514	transcription start site region 150514	1457 bp downstream
Tssr150515	transcription start site region 150515	1061 bp downstream