rs31814187 SNP Detail

Summary

• ID
  rs31814187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35253913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCCAC CCCAACACTG
  TGGTATTGGA GAGCAAACCT TATACTTGCT CGGCAAGTGC TCTGTATTTG AGCTGCGCAC
  CCCCTACCTC TGTCTTAAGC CTTAGCTGCA AACATCCAGT TCTGTATTTT GAGTGTAGTT
  TCTCTCCTGA CCCACATGGG TCTCCTATCT TGTAATTTTA AAGAAAGTCA CGTTAGTGAT
  W
  GTACAGCTAT CCCTGCTTGT TGAAGGCAGC AGTGGTCTGA GTACTGGCTG AGACTTAGAC
  AGGATGAAGG AATAGGATGA ATAGGATTCT TAACAGGAGT AAGTGGCCTG AGCGTTGGCT
  AAGCATTTGG AGGCCTAGAG GTTTAAAGGA GATCTATTTA TTGAGTACTG AAGTAGGGAG
  AAGGTCTCAC CTAAGGTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49279553	NES12739445	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31814187					SNP	A	A	A	A	T	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49279553	NES12739445	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35253913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	1101 bp distal
Ctnna1	catenin alpha 1	within coordinates
Tssr150509	transcription start site region 150509	1957 bp downstream
Tssr150510	transcription start site region 150510	1934 bp downstream
Tssr150511	transcription start site region 150511	1907 bp downstream
Tssr150512	transcription start site region 150512	1431 bp downstream
Tssr150513	transcription start site region 150513	1042 bp downstream
Tssr150514	transcription start site region 150514	1020 bp downstream
Tssr150515	transcription start site region 150515	624 bp downstream