rs31814188 SNP Detail

Summary

• ID
  rs31814188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35253244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATATTTTG TGTTTAGCGT
  TGAGTTTTAA AGACTACAGG TGGATGTTAC CTTAAGAAAT GGAATTTGTT TTGTTTTACT
  AAAGGATTGA ATGGGGAAAT AATTTCATAG CCTCTGTTTA ATTGTTCATC CTTTCTGACT
  TACTAAGTTA AAAAAAAACA AACAGGTTTT AAAAATTCTT TCTTTGAGAC CTGAAAGCTT
  Y
  TCTAGTGTCA TATCCTTTTT TTTTTTTTTT TTTTTTTTTT TTAAATTCCA TTCTGGATCT
  CACTATGAAG CCCCAAACTA GCTCAAGCTT CCTGAGTGTT GGGGTTCAGA TGTGTGCCAT
  CACACCTGTC TGGGCCATAT TGTGTATAAT GCAAACAACA GAAGCGAGTG GGAGCATGGA
  TGGGGTGTTA GTAAGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49279554	NES12739531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31814188					SNP	T	T	T	T	T	C	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49279554	NES12739531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35253244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	432 bp distal
Ctnna1	catenin alpha 1	within coordinates
Gm46617	predicted gene, 46617	1352 bp upstream
Tssr150509	transcription start site region 150509	1288 bp downstream
Tssr150510	transcription start site region 150510	1265 bp downstream
Tssr150511	transcription start site region 150511	1238 bp downstream
Tssr150512	transcription start site region 150512	762 bp downstream
Tssr150513	transcription start site region 150513	373 bp downstream
Tssr150514	transcription start site region 150514	351 bp downstream
Tssr150515	transcription start site region 150515	41 bp upstream
Tssr152859	transcription start site region 152859	1373 bp upstream