rs31815268 SNP Detail

Summary

• ID
  rs31815268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93296982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC CCGCCTCGCC TCCAGAGTGC
  W
  GGGATTAAAG GCGTGCACCA TCACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39327808	mCV25052417	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss325065672	CHEV_15_93229532	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31815268					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93296982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7581	CpG island 7581	203 bp distal
Pphln1	periphilin 1	within coordinates
Tssr132763	transcription start site region 132763	1108 bp downstream
Tssr132764	transcription start site region 132764	1089 bp downstream
Tssr132765	transcription start site region 132765	678 bp downstream
Tssr132766	transcription start site region 132766	663 bp downstream
Tssr135972	transcription start site region 135972	900 bp upstream
Tssr135973	transcription start site region 135973	758 bp upstream
Tssr135974	transcription start site region 135974	749 bp upstream
Tssr135975	transcription start site region 135975	471 bp upstream
Zcrb1	zinc finger CCHC-type and RNA binding motif 1	764 bp upstream