rs31815867 SNP Detail

Summary

• ID
  rs31815867
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGC TCCTATTGGC TTGGTCGCGC
  K
  CCACGCGCAC CCTTCAGGTA ACTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46071843	mCV23832888	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss148642748	ENSMUSSNP4902324	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss322127383	CHEV_7_29941338	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31815867					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855744 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	91 bp upstream
Gm73440	predicted gene, 73440	134 bp downstream
Rr400219	regulatory region 400219	within coordinates
Rr644491	regulatory region 644491	251 bp distal
Rr644492	regulatory region 644492	596 bp distal
Rr644493	regulatory region 644493	within coordinates
Rr644494	regulatory region 644494	102 bp distal
Rr644495	regulatory region 644495	2 bp proximal
Rr644496	regulatory region 644496	991 bp proximal
Tssr65599	transcription start site region 65599	651 bp downstream
Tssr65600	transcription start site region 65600	628 bp downstream
Tssr65601	transcription start site region 65601	565 bp downstream
Tssr71610	transcription start site region 71610	703 bp upstream
Tssr71611	transcription start site region 71611	688 bp upstream
Tssr71612	transcription start site region 71612	589 bp upstream
Tssr71613	transcription start site region 71613	363 bp upstream
Tssr71614	transcription start site region 71614	324 bp upstream
Tssr71615	transcription start site region 71615	109 bp upstream