rs31816000 SNP Detail

Summary

• ID
  rs31816000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101311890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC CCTCGATCTA GCTCAAGAGG
  Y
  TCTAATGCAA GAGCAGGAAG CATTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47092530	NES11616042	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		T	C	T	T		C
ss145557376	ENSMUSSNP4447256	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss322351562	CHEV_7_108811197	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31816000					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092530	NES11616042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101311890 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	1068 bp upstream
Cpgi19507	CpG island 19507	877 bp proximal
Rr400489	regulatory region 400489	814 bp upstream
Rr652442	regulatory region 652442	462 bp distal
Rr652443	regulatory region 652443	460 bp proximal
Rr652444	regulatory region 652444	1275 bp proximal
Rr652445	regulatory region 652445	1329 bp proximal
Tssr68257	transcription start site region 68257	920 bp upstream
Tssr68258	transcription start site region 68258	931 bp upstream
Tssr68259	transcription start site region 68259	952 bp upstream
Tssr68260	transcription start site region 68260	1044 bp upstream
Tssr68261	transcription start site region 68261	1058 bp upstream