rs31816306 SNP Detail

Summary

• ID
  rs31816306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128651625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTATGGAT GTAAAATGCT TACACTGAGA ACTGAGGGTC
  ATTATAGCTC CAAAATTGAA GACCCTGAGT TACTCGATGT TGCCATCCTG AGAGGAAGCT
  Y
  TATGGTGGAA ACTCAAAGGT CATGTGAAAC TGAGAGACAC ATATATTTCC TTTATCTGTG
  TTGTGACAGA ATTTTCTGAA GAGATACAAG GGGACTTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48091123	NES11860417	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	T		T	T	C		T
ss133644073	ENSMUSSNP54753	ENSEMBL	ENSEMBL_Sanger	f	SNP					C
ss321945998	CHEV_6_128624680	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31816306					SNP	C	C	T	C	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48091123	NES11860417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128651625 () rs orientation: forward

Symbol	Name	Function Class
Clec2h	C-type lectin domain family 2, member h	within coordinates
D6Mit257	DNA segment, Chr 6, Massachusetts Institute of Technology 257	1237 bp distal
Tssr59073	transcription start site region 59073	649 bp downstream
Tssr59074	transcription start site region 59074	88 bp upstream
Tssr59075	transcription start site region 59075	1957 bp upstream