rs31816771 SNP Detail

Summary

• ID
  rs31816771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89813454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG ACCTGCTTTA TAACTAGTAG
  Y
  TACCAGTTAT ACCTGGAAAG AATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46072154	mCV22978526	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145293379	ENSMUSSNP4782932	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322314341	CHEV_7_97312756	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31816771					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89813454 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1172 bp downstream
Tssr67721	transcription start site region 67721	1089 bp downstream
Tssr67722	transcription start site region 67722	151 bp downstream
Tssr67723	transcription start site region 67723	1259 bp upstream
Tssr67724	transcription start site region 67724	1806 bp upstream
Tssr67725	transcription start site region 67725	1851 bp upstream
Tssr67726	transcription start site region 67726	1864 bp upstream
Tssr67727	transcription start site region 67727	1928 bp upstream