rs31817619 SNP Detail

Summary

• ID
  rs31817619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53858030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACTGTGA ACTCCCAGCA
  TCCCTCTCCA ACCTCCCCCT TCAGAAGCCT ACGAGTGTCT TCGGAAGATG AAATTAGTGA
  ATTCTTTAAA CAATTCAGAT CTTACCCTAG GCAGCTTTGG ACATCTGTCA ACAGAGAGCT
  CAAGTCATCT GTTGTCACAA AGGGACCCAT CACCTACACT TCCACATAAG ACCTGTGAGA
  R
  TTTTTTATCA TTACTACCAG AGAACACTGA CAAGTGTTTG GAAAAGATGG GGAGACCTCT
  GAGAAAAGCA GCCCATTGCT CCTCAAGACA ACCTTGGCTT GTTTACTTGA GGCTTAGTCA
  AAATGTAGCT TCTTTCCCTG AGACCTGAGA GAAGGTACCT TGAGAGATAA GACAGAATGC
  TGGCATAGTC TCCCCGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47092451	NES11250616	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31817619					SNP	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092451	NES11250616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53858030 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	1971 bp proximal
Rr267638	regulatory region 267638	772 bp proximal