rs31817744 SNP Detail

Summary

• ID
  rs31817744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101313126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATAAGCG GCGTCTTCGA
  ACGCGCCGCG GCAGCCATGT TGATCGTGGC TAGCACAGGG GCCGGCACCA GCGGGTTTTA
  GAAGCAGGTG TCATGATGTT GTCCGCGGTG TTGAGGAGAA CCACGCCAGC GCCTCGGCTC
  TTCCTAGGGT TAATCAAATC TCCATCTCTC CAAAGCCGGG GAGGTGCTTA CGGCCGTGGC
  R
  TTGTCACCGG AGACCGCGGG GAGCCGCAGC GGTTGAGAGC TGCCGCTTGG GTGCGCCCTG
  GAGCATCTTC TACCTTCGTC CCCGGACGGG GGGCAGCCAC CTGGGGGCGC CGTGGAGAAC
  GCACCGAGAT CCCATACCTG ACTGCCGCCT CGTCGGAACG CGGTCCTAGC CCCGAAGAAA
  CACTCCCGGG ACAAGACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47092545	NES11615995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31817744					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092545	NES11615995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101313126 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	within coordinates
Cpgi19507	CpG island 19507	within coordinates
Rr400489	regulatory region 400489	121 bp downstream
Rr652442	regulatory region 652442	1698 bp distal
Rr652443	regulatory region 652443	136 bp distal
Rr652444	regulatory region 652444	39 bp proximal
Rr652445	regulatory region 652445	93 bp proximal
Tssr68257	transcription start site region 68257	306 bp downstream
Tssr68258	transcription start site region 68258	302 bp downstream
Tssr68259	transcription start site region 68259	240 bp downstream
Tssr68260	transcription start site region 68260	185 bp downstream
Tssr68261	transcription start site region 68261	129 bp downstream