rs31818077 SNP Detail

Summary

• ID
  rs31818077
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103306428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTCAAG GCAGAAACCT
  AGCCAACCCA CTTGGCTGGG TCCTCCCATA TCAGACATTA ACCAAGAAAA AGCCCTCCAG
  ACTTCCTCCT GGCAATCTGA TGGAAAGATT TTCTCAATGG AGGTTCCTCT ACCCAGATAA
  CTCTTTCTTG TGTAAAGCTG TCAAAACAAA ACAAGACAAA CAAACAAAGT AACTAGGACA
  W
  ATGACTTTTT AGAGTTCTAA TGTAATTTAC ACATCTTTTC TAGTTTCTAG GGCTGTCATT
  TTACATTCTT AACAGTATCA TTTAAAGCAC AAAAGTTAAT TTGTAGGGCT GGAGAGGTAA
  CTCTGCCAAA AAGATACTTA CTTTTTAAGC ATGTTGACCT GAGTTCAACC TTTGGAATCC
  ATGTTTTTGT TTTTGTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49778613	NES12397281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs31818077					SNP	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778613	NES12397281	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103306428 () rs orientation: forward

Symbol	Name	Function Class
Rr10272	regulatory region 10272	within coordinates
Rr10273	regulatory region 10273	134 bp proximal
Rr10274	regulatory region 10274	1494 bp proximal
Rr395465	regulatory region 395465	1314 bp downstream