rs31818100 SNP Detail

Summary

• ID
  rs31818100
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40516729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACATTC CTTTTGGGTG
  ATGTAAGTCA GCCAATTCTA TGAAAGATCT ATGAAAACAG TAACGTACAA TAAATCCAAT
  TCTAAGATTC TGTGCATGCC AATTCAACTA TAATGATTTG AGAATGAGGG GGCTAAAAAG
  CTCCAGTCTC TGTTTTTTAA CCCCCCCACA CACACACACA CACAAATACA AATAACCTTG
  M
  TTTTCATGGT ACTTAGGATC ATAATTTGTT GGCCCTTGCA GGCAGGGACT TGGTCATTAA
  CTGCCTTTTC CGTATCAAGG ACCATGTACT GTACTGTCAT AACCTCATAT GGTCATATAG
  CTAATGTGAT GTAATAAGAC AAGTGGCCTT CAGCCTTGTG CTAAGATTTG CTCAGCCATA
  CCTTTCATGA GGTAACTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39329048	mCV23354263	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss147693520	ENSMUSSNP452181	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31818100					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40516729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	1037 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	816 bp proximal
Rr501589	regulatory region 501589	1713 bp proximal
Tssr4586	transcription start site region 4586	1962 bp upstream
Tssr131170	transcription start site region 131170	1548 bp upstream
Tssr131171	transcription start site region 131171	1579 bp upstream
Tssr131172	transcription start site region 131172	1661 bp upstream
Tssr131173	transcription start site region 131173	1687 bp upstream
Tssr131174	transcription start site region 131174	1736 bp upstream
Tssr131175	transcription start site region 131175	1875 bp upstream
Tssr131176	transcription start site region 131176	1926 bp upstream
Tssr131177	transcription start site region 131177	1975 bp upstream
Zfpm2	zinc finger protein, multitype 2	1709 bp upstream