rs31818145 SNP Detail

Summary

• ID
  rs31818145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103862885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATCTGCA GGTAAAGCTG
  TATGGTAAAG CTCTTGCCAG GTATGTGTGA AGCATTGGTT CATTACCCAG TACCACAAAG
  ATAATTAGAT GAAAGGTAGT AGGAGAAGTA ATGTATTCAG TGAGTAGAAC ATCTAAAATT
  AACTTCAAAA AAGATTAATA ATGGAAACCT GGGTTTTATT CCAGAGCTCA TCCAGAGAGC
  K
  GTTTAGACTT ATGCTGTAAA TATCTTTAAG TGGCACAGTA AGACAGTAAA TACCAATAGA
  CTGATCTCTC ATATTGTAGG TTGAATGTGT CCAGTGCTAA GTTTCTGTGT TATATGTTCT
  TCCAACATTA TGTGATAGCA TCTAATTGCA GTATTTCTCT GAAGTTTATA TTAAGCTGTT
  CAATTTTAGC TTGCAGGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778401	NES12394532	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31818145					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778401	NES12394532	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103862885 () rs orientation: forward

Symbol	Name	Function Class
1700121L16Rik	RIKEN cDNA 1700121L16 gene	within coordinates
Rr6331	regulatory region 6331	1921 bp distal