rs31818487 SNP Detail

Summary

• ID
  rs31818487
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103527102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTGCCT ATGAATGATC
  AGATCCGGGA GCTTCAGACT ATCATCCGGG ACAAGTAAGC TTAGAGCGGA AGGGAAAAGG
  GAGCGGAGGG CTGCAGGGTG AAAGTAAAAA GCTTCTGTTT GCATTTGGCA CACTGGTCTT
  TGGGGATTAG AGCCAGGCCT CTTTCTTTGG CCTGTGAGTA GGGAGGGAGT CAGTGAGACA
  S
  TTCTGTGGCC CCTTCTTAGT TGCTGCGGTT AACATTGCTT TGTTTAGGAA GGAAACCTTT
  TAGGTAGCCT TCAGCCTCTT CCGGCCTCTT TGTCTGTCTT AAACATGACC AATCCTCTAC
  TGTGCCAGGC AGGTACACAC CCCTATGCCA TCTGCTCAGT TCCCGACCAC GTGGTAAATG
  TATAACCCAG GAATGGTTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778523	NES12396028	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31818487					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778523	NES12396028	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103527102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22897	CpG island 22897	232 bp distal
Rr693080	regulatory region 693080	668 bp distal
Tssr161735	transcription start site region 161735	638 bp downstream
Tssr161736	transcription start site region 161736	339 bp downstream
Tssr161737	transcription start site region 161737	303 bp downstream
Uprt	uracil phosphoribosyltransferase	within coordinates