rs31818489 SNP Detail

Summary

• ID
  rs31818489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103526249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTTACATG TGTAATCCAC CCGTATCTTT TCTTGGCTCT
  ACCAAAGTTC TGATTGCAAG AAGTCCTAGG GGTTTTCTGA GGACTCAGCA ACCAGGGATA
  K
  CTCTGGTTTA GCCACCTCTG CCAAGCAACT GTGATAATCT CTCAAGCAGG AAAGACTTAA
  AAGAGTTAAC AAACCAGCAT GCTGTAGACT GGCAGAGAGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49778525	NES12396026	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31818489					SNP	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778525	NES12396026	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103526249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22897	CpG island 22897	95 bp proximal
Rr693080	regulatory region 693080	within coordinates
Tssr161735	transcription start site region 161735	131 bp upstream
Tssr161736	transcription start site region 161736	478 bp upstream
Tssr161737	transcription start site region 161737	519 bp upstream
Uprt	uracil phosphoribosyltransferase	175 bp upstream