rs31818490 SNP Detail

Summary

• ID
  rs31818490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103525328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAGTGA TGTATAGACT
  TGGAAGTAGG ACACAAACAA ATATTGCTTA TTTTAATTAT TTTTGAGACT AGAGCTTGCT
  TTATAACTCA GGCTAGCTTT GAACTCTTGA TCCTTCCATG TCAGCCTTCA AAGTGTGGGG
  ATTACAGATG TGTGCCTTCA TGTCAAGTTA AAACTCTGCA TCGTAACAAG CTCTACAATT
  K
  TTCTGATACA ATGGACATTT GCAAATTATT ATTCTAGACT TTCTTGGTGG GTACCTAAAC
  ATTTTTAAAA GCCATCCTTC CAAGTATTGT TTGGGAGAAC AAACAGTGTA ATGAAAATTA
  TGCCATAGTA ACATGTGCAA TTCAGTGCCC AACCAGTATC AGTAAGAAAA ATTTTAGTGG
  TCAAGCGTAC TTAAGAAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778526	NES12396049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31818490					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778526	NES12396049	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103525328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22897	CpG island 22897	1016 bp proximal
Rr693080	regulatory region 693080	699 bp proximal
Tssr161735	transcription start site region 161735	1052 bp upstream
Tssr161736	transcription start site region 161736	1399 bp upstream
Tssr161737	transcription start site region 161737	1440 bp upstream
Uprt	uracil phosphoribosyltransferase	1096 bp upstream